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From this analysis, we can distinguish four major patterns of expression (Table 1): Group I: higher expression at early seed development.
Expression of genes is coordinated with four major patterns of expression observed: high in floral buds; high during cell division; high when starch levels and cell expansion rates peak; and high during ripening.
In order to compare the patterns of expression in hybrids relative to their parents in the context of the entire developmental interval, we used fuzzy c-means soft clustering on the same 2,052 genes described above [ 27], which allowed us to define six clusters which represented major patterns of expression variability over the sampled ontogenic interval.
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PCA was used to identify major patterns of gene expression [ 79].
We previously observed that EEDS treatment induced two major patterns of gene expression in A549 human lung cancer cells [ 6].
We were able to identify three major patterns of gene expression and over-represented gene ontology categories during stem development.
gambiae mosquito abdomen-derived cDNA libraries to elucidate major patterns of gene expression through 48 hours post ingestion of a blood meal.
Differentially expressed genes between stages of leaf or cotyledon development were determined, major patterns of gene expression were defined, and shared genes were identified.
To gain an overview of the major transcriptional response patterns, we analyzed log2FC corresponding to 3139 genes using soft clustering, a noise-robust method to reveal the major patterns of co-expression (Futschik and Carlisle 2005).
This study showed that the early stages of allohexaploidization, leading to the formation of allohexaploid wheat, exhibited two major patterns of global gene expression alteration: parental dominance expression and non-additive expression.
To obtain more clues about the major patterns of temporal gene expression over 12 months, we performed a K-mean cluster analysis to identify distinct clusters (Figure 3; Dataset S2).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com