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The "safest" composite genes are found in all viral classes (following Baltimore classes, major monophyletic classes, or nucleic acid types).
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Our estimate of the GABAA receptor phylogeny shows two major monophyletic clades (Fig. 1), which is consistent with previous studies [3], [23] [25].
The figure shows that there are five major monophyletic clades representing distinct geographical regions and biomes.
As shown in figure 3, 11 major monophyletic clades were assigned.
The tree presents three major monophyletic clades, grouping each of the families described in the P superfamily, namely Galileo, 1360, and P element.
The hermaphroditic strains were all placed outside a major monophyletic clade that contained the majority of other Panagrolaimus nematodes.
Despite the major structural and phylogenetic differences between their members, groups of sequences from viruses from all Baltimore and monophyletic classes (fig. 4 b and supplementary fig. S4, Supplementary Material online) are indirectly aggregated into the giant-connected component, and in some other connected components.
Virus phylogenetic analysis reveals two major monophyletic groups: hard tick and soft tick-vectored viruses.
According to our molecular mitochondrial cyt b data, the subfamily Leuciscinae comprises fourteen major monophyletic lineages.
The phylogeny of these eukaryote TLPs reveals three major monophyletic groups.
Among crustaceans, major monophyletic lineages recovered are Cirripedia, Branchiopoda, Decapoda, Stomatopoda, and Malacostraca (Decapoda + Stomatopoda).
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