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The cluster analysis identified five major clusters: A, B, C, D, and E. This analysis showed that the majority of the oxidant responsive genes belong to the PerR and/or Fur regulons, suggesting that PerR and Fur are the main regulators of the oxidative stress response in C. jejuni.
The highly conserved 52 residues of the binding domain of B. distachyon DOFs, has been used to produce a phylogenetic tree where these proteins are grouped into four Major Clusters A; B; C and D. Clusters A and C comprise the majority of BdDOF family members (22 in total), whereas the Clusters B and D contain only 3 and 2 members, respectively.
From the phenogram, four major clusters (A, B, C, and D) were distinctly recognized by similarity coefficient from at least 0.60 and up to 0.70 (Fig. 6).
Hierarchical cluster analysis with the top 15 miRNAs from this list produced two major clusters (A and B) which differed significantly in survival in both the training (p<0.0001) (Figure 3) and validation tumor sets (p<0.002)(Figure 4).
According to the tree, the genes form four major clusters (A, B, C, D).
In the Dice/UPGMA dendrogram (Fig. 3), the S. speciosa accessions were divided into two major clusters (A and B).
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To reduce noise, the data set was filtered to only the more robustly expressed 249 genes and subjected to hierarchical clustering, resulting in 6 major clusters (A-F, Fig. 6b).
For group I genes, hierarchical cluster analysis enabled us to identify 2 major clusters, called A and B. Cluster A had the 1,482 most abundant transcripts in fruit-pericarp at 217 DPA, while cluster B bore the 2,909 most abundant transcripts in fruit-AZ at 217 DPA.
When carrying out a phylogenetic analysis of the translated partial amino acid sequences, we observed a small but distinct second cluster B in addition to the major cluster A constituted by the FIPVs having leucine at position 1058 in their S protein.
XbaI mrp-PFGE grouped the majority of isolates in two major clusters; cluster A included 90% of EP isolates positive for blaOXA and cluster B covered most NEP isolates that harbored blaTEM gene and PP isolates with blaOXA gene.
The 24- loci MIRU-VNTR genotyping technique grouped the MDR-TB isolates into three major clusters: Lisboa3-A, Lisboa3-B and Q1.
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