While the previous sets included mainly alignments of shared, structured domains, the reference set described here focuses on (i) subfamily specific features, (ii) motifs in disordered regions, (iii) the effect of fragmentary or otherwise erroneous sequences on MSA quality.
Fibers are mainly aligned with streamlines of the headbox fluid flow; more precisely, the alignment of fibers forms a varying distribution which depends on the dominating flow conditions.
Application of biomechanical stimuli results in remodeling of the cell body mainly through alignment and generation of stress fibers (Wang et al. 2001).
The CIDRSeqSuite version 3.0.1 pipeline was used for secondary bioinformatics analysis, which consists mainly of alignment using Burrows Wheeler Aligner version 0.5.9 to the human genome reference sequence (build hg19) and applying the Genome Analysis Toolkit (GATK) version 1.4-29-gcd352f5 to perform local realignment and base quality score recalibration.
The ASD is described as the uninterrupted line of sight between the driver's eye and the obstacle, and depends mainly on the alignment configuration as well as the various sight obstructions due to constructional elements or equipment of the roadway (backslopes, barriers, walls, etc).
Our findings show that the investigators and inspectors translated the need for alignment mainly in alignment efforts on 'relevance'relevance
We mainly discuss sequential alignment in this paper.
As we demonstrated as follows, a gene model mainly affects the alignment of junction reads, but has little impact on non-junction reads.
We do not include NetworkBLAST-M and Graemlin in our comparisons because they mainly focus on alignment of multiple networks, and because Graemlin requires the unavailable in-house SRINI algorithm (Srinivasan et al., 2006) to assign weights to PPIs.
Sequencing reads were aligned on the human reference genome build 37 (GRCh37) and human reference mtDNA sequence (revised Cambridge reference sequence, rCRS [ Andrews et al., 1999]), mainly by BWA alignment tool.
