Sentence examples for main secondary structure from inspiring English sources
As a point of reference, we also induced rules based on domain-specific global structural similarity in terms of orientations and connectivity of the main secondary structure elements (CATH fold, see Materials and Methods) [33].
The core structure comprising the main secondary structure elements of the CNX lectin domain [10] was used as a starting search model.
Fig. 1 shows a cartoon representation of NS in its native conformation, where such main secondary structure features are highlighted.
The main secondary structure prediction tool is RNAfold, which computes the minimum free energy (MFE) and backtraces an optimal secondary structure.
The analysis of MD trajectories of 2 ns showed that the open close motion was coupled with inter-domain twisting motion in the ligand-free state, and some loop regions in the small domain contributed primarily to the flexibility of this protein while the main secondary structures maintained the fairly stable conformation.
We characterize structural environments of the amino acid variants by the following properties: i) side-chain solvent accessibility, ii) main-chain secondary structure, and iii) hydrogen bonds from a side chain to a main chain or other side chains.
SSTRUC calculates torsion angles within a main chain to assign secondary structure.
The main difference in the secondary structure is observed in the loop connecting the helices α1 and α2 and in the helix α2 itself.
The local structural environments of amino acids were first defined as suggested by Overington and colleagues [28], [29]: 1) main-chain conformation and secondary structure, 2) solvent accessibility and 3) hydrogen bonding between side chains and main chains.
A positive answer to the question may lead to transition from the "planar approach" to the "stereo approach" that rely on the primary structure as the main source of an arbitrary secondary structure.
The damage, both on the main trusses and on the secondary structure, is first analyzed.
