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Four main expression profiles were observed in both analysed tissues, which involved oscillatory patterns following inflexion points determined by temperature or light presence variations.
Structuring this data in clusters provided a clear illustration of the main expression profiles of many novel genes, such as genes from the functional classes 'chemotaxis' and 'phage, transposon, or plasmid' which are found in clusters 1 and 5 respectively.
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When Verdejo DEG were clustered, only three main expression profile groups were detected because profiles of transcripts up-regulated around noontime could not be distinguished from those up-regulated during the daytime contrasting with the Tempranillo experiment.
In the case of ovarian metastases this can be expected since ovarian metastases are thought to arise by loss of cell-cell adhesion whereas the main tissue expression profile remains the same.
Yet, PCA analysis indicated two main groups of expression profiles in all samples when tested individually and not in groups (Figure 6E).
Two main types of expression profiles were obtained among the signature genes.
The main UPFs for expression profiles (n = 10) and their average normalised transcript abundances are shown.
Two main groups of expression profiles are: the one with known, and the one with unknown initial perturbation state of the expression of genes in the underlying network of regulatory interactions.
The main differences in mRNA expression profiles between pre- and post-senescence MSC are shown in Table 3. Table 4 shows differences between pre-senescence MSC and TMC.
Hierarchical clustering analysis of the differentially expressed genes revealed 11 main clusters (A-K) of expression profiles with clusters I-J being primarily composed of genes that were down-regulated in at least one strain and clusters C, D, G and H containing genes that were up-regulated in at least one strain (Fig. 3; ~2-4 fold).
The CST3 gene: Sun Y explores differentially expressed genes in leukemia gene expression profiles and identifies main related genes in acute leukemia.
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