The upper main cluster included most of the amino acid metabolites whereas the lower included caffeine, cyclo (leu-pro), 3-methyl catechol sulfate, and o-cresol sulfate.
The main cluster included 43 tumours that express ESR and PR receptors, some luminal markers and/or Her2neu indicating that this cluster included the luminal and Her2neu tumours and was defined as a non-basal breast carcinoma cluster (Supporting Information Fig S1A).
Consistently, the STRUCTURE analysis indeed defined two main clusters including respectively S. meliloti and S. medicae, without any trace of admixture between the two species.
Several populations from northern California (localities 08, 09, 10, and 11) were separated from this main cluster, however, including the population of A. m. langei at Antioch Dunes.
Furthermore, G. max and P. vulgaris genes are distributed in three main clusters: a) a cluster including PvBPGIP1, PvBPGIP2 and GmPGIP3; b) a cluster including PvBPGIP3 and PvBPGIP4 and c) a cluster containing the remaining G. max genes.
The main cluster 'A' included the subgroups A-1 and A-2.
Main cluster III included the 20 Gy irradiated individuals Chiang Mai Red and Sweet Pink varieties (as mentioned in morphological part, these individuals did not go to flowering stage) and KP20-4.
Phylogenetic analysis of these sequences produced two main clusters: one including strains GRE3 and GL04 and another containing the remaining 12 strains.
The second gene group, located after the main nod-gene cluster, included nifTZ, fdxN, fixN, nifBA, fixXCBA, nifWSU and nifQ, which also showed the highest similarity to homologues in M. loti and R. etli.
