Sentence examples for main chain position from inspiring English sources

This electron density guided manual rebuilding, allowed to trace these loops with confidence in main chain position.

This revealed no major change in main chain position, although a rotation of 7 9 degrees between upper and lower FNIII domains was evident, which is minor in comparison with the conformational changes observed with tyrosine kinase ECDs on ligand-induced activation.

Analysis of main chain, side chain parameters and Ramachandran plot analysis used the PROCHECK algorithm.

This was due to a favorable change in binding enthalpy contribution suggesting that the main chain at position −5 participates in stabilizing molecular interactions.

The root-mean-square (rms) fit between the two structures for main chain Cα positions is 0.29 Å.

deviation between IN main chain atom positions in UIMn and CIMn Hareetet al, 2010a, 2010b) structures is only ∼0.35 Å.

However, there are two clusters of conformations: one with the usual active DFG-in conformation that places the DFG Phe into the hydrophobic spine, and another conformation with altered main chain angles and position of the activation loop.

Amino acids in this position are not conserved among the NAs of different subtypes [ 20, 48], however, both main chain and side chain atoms of 400N interact with the sialic acid residue in the N9 NA (Fig.  1b), suggesting that substitutions in this position could affect the stability of the complex.

Side chain and main chain atoms in each position of the ligand are also engaged in van der Waals interactions with residues of the L3 loop (P1 → G199, P3 → F197), the L5 loop (P2 → M249) and the L1 loop.

(M) Main chain, (S) Side Chain.

Linear LCPs can have flexible main chain, flexible side chain or rod-like main chain architectures.