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But their main chain conformations are in convex shape, indicating that the flexible side chain of K7 should point outwards.
The calculation was made by restraining the main chain conformations and allowing the side chain dynamics.
Both Tyr48 and Tyr137 and even Ile13 are on the borderline for allowed main chain conformations of the Ramachandran plot [60].
In regularly-repeating polypeptides the main chain conformations of successive amino acids are the same, or at least roughly so.
Polypeptides can also fold to form a different type of structure where the main chain conformations of successive amino acids are enantiomers (mirror images).
Interestingly, the main chain conformations of the two inward-facing protomers B and B' are likewise practically identical (rmsd 0.6 Å), but the citrate and Na+ coordination in B and B' is clearly different.
Similar(47)
A structural alphabet (SA) is a library of local protein structure prototypes that can abstract every part of protein main chain conformation.
This indicates that the membrane of 10c maintains the helical main chain conformation of 9c with a large excess one-handed helix sense.
Arylidene polymers are showing a preferred main chain conformation in the solution phase when subjected to the circular dichorism (CD) analysis.
During the crystal mesophase transition, obvious morphological changes are observed due to the marked changes in main chain conformation and intermolecular distances between crystalline phase and mesophase.
The nonperiodic structure is preserved during the crystal mesophase transition because of the similarity of main chain conformation and intermolecular distances between crystalline phase and mesophase.
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