Sentence examples for made by alignment from inspiring English sources

However, as the author points out, there is uncertainty in the inferences made by alignment or conventional phylogenetic tools because of the nontemplated regions of recombined antibody genes, and the high frequency of somatically mutated residues in clones from memory B cells.

The statistics of changes made by this alignment are provided in Table 2.

Sequences were edited and aligned using Sequencher™ (Gene Codes Corporation), and final adjustments to 28S and wsp alignments were made by eye, following previous alignments (wsp: Shoemaker et al. 2002; 28S: Lopez-Vaamonde et al. 2001).

In brief, to optimize the parameters, we maximized the number of matches between the gold standard alignment and the alignment made by the threading method.

Sequence analyses were made by BLAST and alignments by CLUSTALW.

Alignments were made by finding the best complete alignment diverging from the genomic sequence by no more than 80% of the bases.

Periodically gathering statistics that show improvements made by the office's alignment to business objectives -- and comparing them to projects that were not allowed -- would demonstrate success in a manner that is inarguable.

SP5 [11] used a profile-based gap model, which depends on the multiple sequence alignment made by PSIBLAST.

Nucleotide divergence in this article was defined as the number of mismatch bases divided by that of comparable bases after pairwise alignment made by CLUSTALW.

This alignment, made by the Dali server (Holm and Rosenstrom, 2010), was used as a profile, and the collection of Ras superfamily sequences was aligned to this profile using MafftWS (Katoh and Standley, 2013).

To construct the alignment made by the MRF method (Bandyopadhyay et al., 2006), we downloaded the result file (http://www.cellcircuits.org/Bandyopadhyay2006/data/Bandyopadhyay_results.xls) with probabilities for all possible protein association, and we extracted the one-to-one alignment by taking the most probable pairs.