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This paper describes the implementation of the Open Source machine learning package AZOrange.
Calling the algorithms was done using the Scikit-learn machine learning package [79, 80].
We employed information gain attribute evaluator, relief attribute evaluator, and correlation-based feature selection (CFS) from Weka machine learning package [62] for the gene selection.
The implementation of the algorithm was adapted from the WEKA machine learning package [ 52].
Classification was done using Support Vector Machine classifiers as implemented in the WEKA machine learning package [ 27].
For biomarker discrimination tasks using a support vector machine (SVM) classifier, we used the Spider machine learning package, version 1.71 [ 25].
Similar(48)
A few machine learning packages implement semi-automated model hyper-parameter selection.
Some of them are implemented in various machine learning packages, but many are not.
AZOrange complements already available machine learning packages by interfacing and customizing several state-of-the-art machine learning algorithms.
Despite the diversity of available machine learning packages, there is no package fulfilling all of the requirements on an Open Source state-of-the-art QSAR modeling platform.
However, it would be helpful if students know Python already for they will use existing machine learning packages in Python.
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