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Both macaques were identical at eight MHC alleles known to impact viral control.
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Subsequently, MLST analysis with 9 loci (12 ) revealed that 6 representative strains (MF1 1, MF3 1, MF10 1, MF11 1, MF19 1, and MF34 1 strains) from each culture-positive macaque were identical and belonged to a new sequence type (ST), ST22.
These 2 macaques (4284, 33246) were identical at 8 Mamu alleles known to impact SIV pathogenesis (see Materials and Methods).
Nucleotide sequences of ITS (123-bp), gltA (539-bp), and rnpB (336-bp) from all macaques and pools of lice were identical; they differed from from those of B. quintana strain Toulouse by1 3 bp.
The human and macaque sequences for exon 1 as well as human, chimpanzee, macaque and mouse sequences for exon 3 were identical to the respective Ensembl genomic sequences.
For fixed indels, we added the additional requirements that 20 out of 32 directly adjacent flanking positions were identical in the human-chimpanzee-macaque alignment and that there were no gaps at these positions.
They were identical.
The recommendations were identical.
Lamentably, two were identical.
The numbers were identical.
The keys were identical.
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