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Exact(14)
An interesting feature apparent in Figure 2 is that at lower identities M1 shares fewer strains with PB1 and NP.
In contrast to the relatively high, shared HMA4 sequence identities between all three genomes, N. caerulescens HMA4 promoters (NcHMA4p) exhibited lower identities with those from both A. thaliana and A. halleri.
Slightly lower identities were found with other strains from the US and Asia.
As expected, the 5'- and 3'- untranslated RNA (5' UTR, 3' UTR) sequences (UTRs) exhibit lower identities than the coding sequences (CDS) and also lower identities for rodents with modes at ~74%%, than for macaques, with modes at ~94%%.
In stark contrast, peptides from "hypothetical proteins" had only sparse hit patterns with low frequencies and much lower identities.
These lower identities, combined with differences observed in the L segment variable region (Kupe virus aa 755 896), suggest otherwise.
Similar(46)
Lower identity values were observed relating the query sequences to propane monooxygenase gene from the genus Mycobacterium.
Additionally, the 4 ALV-B strains have high homology with the prototype strain (RAV-2), from 99.1 to 99.4%, but they have slightly lower identity with Schmidt-Ruppin B and Prague subgroup B, from 93.3 to 98.4%.
Phylogenetic analysis of R7 alkB gene cluster showed a significant similarity with the homologous system of R. opacus B4 (Sameshima et al., [2008]) and a lower identity with Rhodococcus sp. BCP1 (Cappelletti et al., [2011]).
In general, the lower identity reads follow the taxonomic abundance distribution of mapped high-identity reads.
(CD-HIT can cluster at lower identity thresholds as well, but not as quickly).
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