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Bhaduri et al. [ 94] proposed a somewhat related idea of using a compression algorithm from the LZ family to filter low-complexity reads in a project on identification of nonhuman sequences, such as viruses, in deep sequencing datasets.
The gaps between adjacent alignment boundaries likely represent regions that failed to cover in genomic NGS sequencing projects or low-complexity sequences.
We removed sequence contamination, low-quality and low-complexity sequences from the ESTs using SeqClean (unpublished, 'The Gene Index Project' of Harvard University).
It can be used to automate high-volume, low-complexity, and routine tasks.
All UWS patients were included in the low-complexity UWS subgroup described in a recent study7.
Schuller, R. & Eick, D. Getting access to low-complexity domain modifications.
The workflow removes pcr-duplicates, adapter contamination, low-quality bases, low-complexity reads and merges over-lapping read-pairs.
He added the "low-complexity attacks" involved terrorists using vehicles, knives, firearms or explosive devices.
BLAST searches were performed using the low-complexity filter with the low-complexity sequences masked.
For instance, the dustyFilter identifies and removes low-complexity reads.
Low-complexity filters were applied to remove highly repetitive sequences.
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