Sentence examples for low density panels from inspiring English sources

In addition, results indicate that a more cost efficient implementation of marker assisted selection using low density panels with genotype imputation, would be feasible for these breeds.

However, the accuracy of GEBV predicted by low density panels can be increased through the use of genotype imputation [ 32], where high density genotypes are imputed using low density SNP genotypes and a high density reference panel of haplotypes [ 24].

Currently no low density panels for SNP genotyping are publicly available for swine, but the presented results will be available to aid in the development of efficient SNP platforms.

The F2 animals genotyped with the 9K low density panel were imputed to 60K with imputation accuracy of approximately 0.99, as previously described (Gualdron Duarte et al. 2013).

In contrast, allele frequency impacted imputation accuracy only marginally if the low density panel contained markers that exhibited at least moderate levels of LD (r > 0.5) with the imputed markers in the high density panel (Additional file 3: Figure S3).

Obviously, if a low density panel of SNP was also available for these Dams, the average success rate would be even greater, but at the cost of genotyping the Dams for the low density chip.

Properties of low density panel SNPs for ECA1 selected using three methods (tables for all chromosomes are in Additional file 6: Table S3); total number of SNPs that would be on a genome-wide LDP of equivalent density.

The accuracy of imputation depends on several factors, such as the number of SNPs in the low density panel, their informativeness and distribution across the genome, the relationship between the animals genotyped, the effective population size, and the method used.

Meuwissen and Goddard [ 18] applied a method for imputing whole-sequence genotypes on individuals genotyped at a low density panel and reported that 10% of the missing genotypes were erroneously imputed.

Assuming a comparable decline of LD for increasing marker distance between the Jersey population and our pig populations, we would expect to accurately impute approximately 90% of the high density genotypes, using a low density panel containing 10% of the markers.

In other words, orthogonal modes of the honeycomb scenarios are linearly polarised, and transformation of the electromagnetic energy into heat occurs purely as a result of classical conductivity or loss tangent, which are low for the low-density panels made of low-loss dielectric cores.