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The only long range information included has come from mate-pairs.
However sequencing projects still need medium to long range information to anchor scaffolds on chromosomes and produce high quality reference maps [ 1].
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This approach involves local and long-range information in the CRF neighbourhood to determine the classes of image blocks.
The former acts as a "long-range" information spread, since nodes communicating directly at the social layer may be actually separated by many hops in the physical layer.
As described in the next section, we propose an improved Markov random field (MRF) approach, which involves both local and long-range information in a simpler energy function, to alleviate the aforementioned limitations of our previous work [1].
To help the process of assembly, reads are obtained with some long-range information.
There are multiple parameters that characterize a sequencing platform: read-length, base-call-errors, homopolymer-length, throughput, cost, latency, augmentation with mate-pairs, scaffolding, long-range information, etc.
We conclude and propose that the embryonic retina through spontaneous activity delivers long-range information to its foremost distant terminal, the cortex, coupling the early coordinated development of the visual system as a whole.
This strategy enables the algorithm to concurrently assemble and check the validity of the lay-outs (with respect to various long-range information) through well-chosen constraint-related penalty functions.
Moreover by providing long-range information, it could also solve haplotype phasing.
However, there have been no studies on the long-range information flow between these regions.
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