Sentence examples for long range contact from inspiring English sources

Every node u∈V(G) is given an extra link, called a long range link, pointing to some node v, called the long range contact of u.

In augmented graphs, greedy routing is the oblivious routing process in which every intermediate node chooses from among all its neighbors (including its long range contact) the one that is closest to the target according to the distance measured in the underlying graph G, and forwards to it.

Our study also differ from those devoted to the prediction of long range contact maps (e.g. Punta and Rost, 2005), as these do not generally focus on the quantification of these contacts with respect to the secondary structure and to the evolutionary hydrophobicity profile of the considered residue.

The analysis on the influence of short (<±3 residues), medium (±3 or ±4 residues) and long range contacts (>±4 residues) showed that the cation π interactions are mainly formed by long-range contacts.

Amino acids of extended shape, volume and molecular weight along with more medium and long range contacts were observed in many of the thermophilic proteins.

This can be reconciled with the suggestion that in contact maps long range contacts play a critical role in 3D reconstruction [ 1, 18] and that all alpha proteins are endowed with less long range contacts than the other SCOP classes.

The top- L/10 contacts are chosen in this case as there are significantly fewer long range hydrogen bonds in proteins compared with general long range contacts.

This behaviour is possibly due to the on average lower content of long range contacts in all-alpha protein contact maps than in the other proteins.

First, a slightly revised FRAGFOLD energy function is used, with short range (| i −  j| < 23) and long range contacts treated as two separate equally weighted energy terms.

Not only do short range contacts need to be separated from long range contacts (as we already do), but the redundancy in 3D constraints between neighbouring contacts also needs to be considered in an ideal weighting scheme.

A network without any of the coevolution inputs ('Net only') performs very poorly on long range contacts, though when shorter range contacts are included, a reasonable level of prediction accuracy is obtained.