Exact(4)
Addendum: A Web site supported by the gas industry has posted a long, annotated response to the film.
The second encodes a putative permease, 1624 AA long, annotated as a pseudogene in 95010 (MLC_2290), whose orthologue in GM12 (MMCAP2_0272) is 1773 AA long and possesses two FtsX domains that may be associated with lipid transport.
Li et al. (2010) estimate reweighting coefficients (b i, in our notation) directly, given training data consisting of long annotated, highly expressed transcripts.
Scontig28 was a typical contig that had one long annotated full length arabinogalactan protein mRNA sequence (GenBank accession # ay218846) and five overlapped short sequences (Table 1).
Similar(56)
The reverse primers were designed to target sites 150 nt downstream of the longest annotated transcript, as per the RefSeq annotation, in order to include downstream 3′end processing elements (Fig. 1).
The resulting annotated contigs were assigned gene names and combined using the longest annotated ORF as the transcript.
Genes with exact matches of 7mer candidate seeds to the longest annotated 3'UTR were considered potential targets.
In contrast, the longest annotated dystrophin transcript harbors 78 introns, which contribute ∼99.3% of its gene length.
Primers were designed to amplify regions of exons present in the longest annotated transcript of each gene.
The UTRs of the longest annotated transcripts were used for C. elegans, whereas proxies for UTRs were created for C. briggsae orthologs.
The number of possible synonymous and non-synonymous mutations was derived by examining the longest annotated coding transcript per gene (transcript length based upon Ensembl Biomart described above).
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