G to A transition at the 1534 locus revealed two genotypes GG and GA in the nine investigated goat breeds.
Analysis of a series of backcross lines and near-isogenic lines (NILs) developed to better characterize the effect of the Saltol locus revealed that Saltol mainly acted to control shoot Na+/K+ homeostasis.
Analysis of the SACOL1827 locus revealed a putatively transcriptionally-linked downstream gene (SACOL1828) that is separated from SACOL1827 by 112 bp.
The pilot linkage disequilibrium analysis of SNPs in the P2Y12 locus revealed three SNPs (rs1466684, rs38211667, rs11922647) that showed signs of LD with the known P2Y12 H2 SNPs.
However, detailed analysis of the syntenic region in D. willistoni of the D. melanogaster pstk locus revealed a sequence that could be considered a pseudogenised pstk (see http://genome.imim.es/datasets/2008selenoinsects/#4).
A recent investigation of the locus revealed an insertion in the plasmid copy of shf diminished biofilm formation of EAEC 042 but that deletion of the downstream genes did not [105].
Bioinformatic analysis of the ALKBH5 locus revealed two putative hypoxia-response elements (5'-RCGTG-3') at −486/−482 (herein termed HRE A) and +265/+269 (herein termed HRE B), referenced to the transcriptional start site (Supplementary figure S1).
Finally, the linkage map of the POT1 gene locus revealed the inheritance of the same paternal and maternal alleles by all the affected siblings but not by the unaffected one.
We combined our data with the published Harold et al. study and meta-analysis with all available 6521 cases and 10360 controls at the BIN1 locus revealed two significant variants (rs12989701, p = 1.32E-10 and rs744373, p = 3.16E-10) in limited linkage disequilibrium (r2 = 0.05) with each other.
Comparative sequence analysis of the Mgx locus revealed only one significant variant, a strain with an insertion frameshift mutation in simA and a deletion mutation in a region downstream of mgx, generating an ORF which may encode a second putative mga-like gene, mgx2.
A BLAST analysis upstream and downstream of the VirJ-encoding locus revealed no differences between S19, 2308 or 9-941 (Wyoming strain) DNA sequences, suggesting the involvement of a distal regulatory element(s) in controlling expression of this protein in S19.
