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We assume that the mRNA abundance of each locus is determined by the average effect of two genes on the locus, and that fitness of each individual is determined by the mRNA abundance of a given set of genes.
The breakpoints of the putative CNVs are calculated by the marker positions, that is, for a run of n significant markers the CNV locus is determined as [p1, pn] where p1 and pn are the genomic coordinates of the first and last significant marker respectively of that run.
The genotype at a given SNP locus is determined by analyzing the ratio of Cy3 and Cy5 fluorescence.
Given a locus definition, the proportion of each gene locus covered by all peaks overlapping the locus is determined.
Once a polymorphic locus is determined as such, all software applications perform very well in deciphering the correct genotype.
Once a variant locus is found, the most likely genotype for that locus is determined stochastically based on a consensus of aligned reads.
Similar(51)
The failure locus was determined by computing the probability of nucleating clusters containing one, two, three or more broken fibers.
Genomic DNA was extracted by phenol-chloroform-isoamyl alcohol method from single-strain pure cultures and the SSR pattern composed by the amplicon lengths at every analysed locus was determined for each strain.
Also, the yield locus was determined at 300 K by applying biaxial in-plane loading and fitted with a general flow potential to be used in macroscale analysis.
The physical positions of the markers tightly linked to Pi2-2 locus were determined based on the genome of Nipponbare using the BLAST program on Gramene (http://www.gramene.org/Multi/blastview) ([Jaiswal et al. 2006]).
Insert copy number at each single locus was determined by Southern blot (data not shown).
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