Sentence examples for locus is coded from inspiring English sources

The genotype at a marker locus is coded as 0, 1 or 2, corresponding to the copy number of an arbitrary allele.

Each locus is coded by the number of 'major' alleles and the genotype vector for a SNP set is modeled by a Dirichlet-Multinomial distribution with parameter α = (α1,..., α p), which can be efficiently estimated from genotypes of all individuals (Zhou and Lange, 2010).

Alleles of each locus were coded according to the number of their core repeats.

Multinomial logistic regression was applied to compute OR, 95% CI and p values for association between the minor allele at every locus and either anti-CCP-positive (ORccp-positive) or anti-CCP-negative RA (ORccp-negative), assuming additivity on the log-odds scale (ie, every locus was coded as 0,1 or 2 corresponding to the copy number of the minor allele).

So, the explanatory variables, described by the frequency of allele B in locus, were coded as follows: AA = 0 (absence of the allele B), AB = 1 (presence of one copy of allele B) and BB = 2 (presence of two copies of allele B).

The genotypes at their respective loci were coded as recessive (e.g., TGFB1 869TT vs. 869TC+CC) and as dominant models (e.g., TGFB1 869CC vs. TC+TT).

AFLP loci were coded according to the method described in Evanno et al. (2005) for dominant markers.

In the first generation (base population), marker loci were coded as 1 or 2 and allocated at random, so that allele frequencies (p) averaged 0.5.

As many of the loci are coding and the eight pine species are closely related, we chose not to bootstrap across sites within a locus to ensure that bootstrapped alignments would contain reasonable levels of variation.

The true breeding value (a) of each animal was determined using: where β j is the additive effect of QTL genotype (j) and g ij is the QTL genotype at locus j which is coded as 0, 1, or 2 and is the number of copies of the QTL that an individual (i) carries.

The true breeding value (a) of each animal was again determined using: where β j is the additive effect of genotype (j) and g ij is the genotype at locus j which is coded as 0, 1, or 2 and is the number of copies of the QTL that an individual (i) carries.