Exact(1)
By using the AFLP (amplified fragment length polymorphism) method, 21 pairs of primers were employed and the mutated loci rate of the genome in 10 mutantsnts from 10 varieties was found between 1.7% and 6.2%.
Similar(7)
(PDF 556 kb) Additional file 11: SNP locus rate in oak versus Arabidopsis.
The overall SNP locus rate per base pair was 1.5 % among all samples and 1.2 % within Q. lobata.
The cM/Mb recombination rate estimate was converted into a per-locus rate, with a locus consisting of one CGH segment.
A heredity file (G 4,5)) and locus rate file were incorporated to account for the combined mitochondrial and nuclear datasets and associated mutation rates.
Thus, future surveys should include 3' UTRs to improve λMI estimates for those regions and establish whether they exhibit among-locus rate variation similar to introns.
They were converted to the required per locus rate of the non-recombining blocks used in IM, by multiplying the per site rates by the corresponding number of bases used in each block.
Third, we conducted a run of the JML software [ 55] using the same cox1 dataset, the locus rate of cox1 as yielded by *BEAST, a heredity scalar of 0.5, and the parameters yielded by MrModeltest.
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