As a result, 37,872 loci, of which 35,681 have protein-coding potential, were determined.
These corresponded to 2993 unique loci, of which 526 (∼18%) exhibited polymorphism.
The ISSR analysis with 9 anchored primers also generated 105 scorable loci, of which 85 were polymorphic (80.95%).
The Mycobacterium tuberculosis H37Rv genome presents 88 toxin-antitoxin loci, of which 47 code for members of the VapBC protein family.
All identified microsatellites with designed primers were condensed into 2322 unique clusters (i.e., unique loci) of which 360 were shown to be polymorphic based on multiple sequence reads with different repeat motifs.
AFLP analysis of seven primer pairs for the intraspecific cross of Lepomis cyanellus (green cross) resulted in 768 scored loci, of which 429 were polymorphic.
This module is encoded in both S. meliloti strains Rm41 and 2101 by two separate rkp loci of which one is sited on the chromosome and the other one on the symbiotic megaplasmid [158], [159] (not shown).
A total of 211 SNPs were unlinked to other SNPs, and the rest formed linked groups of 2 or more SNPs from contiguous DNA sequences (called loci), of which there were 327 (Table 1).
The identification of CpG loci of which DNA methylation levels are under genetic control or are related to age or gender will facilitate further studies into the role of DNA methylation and disease.
AFLP analysis of the hybrid cross between L. cyanellus and L. megalotis resulted in 764 scored loci of which 581 were polymorphic and 214 (36.8%) deviated from Mendelian expectations.
We first adjusted the published P. aeruginosa MLVA scheme, as originally described by Vu-Thien et al. The original scheme contained 15 variable number tandem-repeat (VNTR) loci, of which some, due to small repeat sizes, required analysis on a DNA sequencer.
