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Terminal precursor segments from neighboring somatic loci map extremely close to each other, often overlapping.
Seven MIB loci map to one haplotype, whereas the other five are located on the complementary chromosome, for which not all overlapping contigs are available [16], [21].
The SNRPN-SNURF and NDN loci map to the Prader-Willi syndrome region and are imprinted - expressed from the paternal allele in brain tissues [29], [30].
If the e-value is relaxed to −10, 40.3% of the loci map once to the Zebra Finch genome.
These loci, their corresponding unigenes, and functional annotations found using unigene sequences are listed in Table 2. Two of these loci map to 5H, separted by 3 cM.
Blec1, NKR and TRIM27, for example, map to the Z chromosome in the zebra finch genome assembly, while two CD1 loci map to chromosome 12.
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Seven of these loci mapped within or near genes of the canonical WNT pathway and each locus yielded relatively large odds ratios (ORs) for DD disease status.
The intergenic loci mapped by the 3' ESTs represent novel transcribed regions in the genome.
More recently discovered loci mapped onto that phylogeny illustrate that EAEC do have lineage-specific genes [25].
The current map consists of 375 loci mapped onto 11 linkage groups (LGs), with 191 loci detected by SNP markers and 184 loci by SSR markers.
The RGHs identified and characterized, and the high-density consensus genetic-physical map developed herein provide valuable genomics resources for many molecular marker-based studies such as mapping of quantitative trait loci, map-based gene cloning, assessment of genetic diversity, association mapping, as well as marker-assisted selection in molecular breeding in cucumber.
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