Sentence examples for loci identifiers from inspiring English sources

Loci identifiers are from URGI (http://wheat-urgi.versailles.inra.fr/) and are listed in Additional file 2 along with the corresponding Ensembl locus ID and associated high-confidence protein coding gene, where available (http://plants.ensembl.org/Triticum_aestivum/Info/Index).org/Triticum_aestivum/Info/Index

Systematic locus identifiers will be assigned to genes identified along the rice (O. sativa ssp. japonica, cv.

Microarrays (70-mer oligonucleotide microarrays) consisting of probes presenting 23,686 unique genes identified by Arabidopsis genome initiative (AGI) locus identifiers were used.

Homologous ORFs identified in B. hydrogenotrophica appeared to be contiguous based on gene locus identifiers (RUMHYD_1660, and RUMHYD_1665 to 1671; Table S1), however it is unclear at present if these correspond to a plasmid present in B. hydrogenotrophica as a finished genome sequence for this organism is currently unavailable.

We thus identified 1119 Mycobacterium tuberculosis genes that listed both a gene symbols and locus identifiers.

The locus identifiers of the targets are listed in the far right column (TIGR_gene_model).

Below that the current TIGR/RGAP locus identifiers, annotated gene functions, and gene models.

In such cases, the earlier clone-based locus identifiers must become either the alternate ID or the gene synonym.

The new locus must retain the locus identifiers, gene name, and gene symbol from the locus closest to the start position of the new, merged locus.

A locus is defined as a position on the genome, and because each annotation group independently assigns locus identifiers (locus IDs) to all genes, transcripts, and proteins based on their position on the pseudomolecules, the same gene may have a different systematic_locus_ID, depending on the genome, the assembly, and the software used for annotation.

For instance, we compared the AGI locus identifiers of the 98 genes in the cold-specific gene module M8 to those known as cold-temperature responsive genes in the Gramene Pathway Browser (http://plantreactome.gramene.org/PathwayBrowser/ SPECIES=9079025&DIAGRAM=9085214&PATH=9085019,9085215&DTAB=MT) and only two genes, DREB1A (andG25480) anDEAR1R1 (AT3G50260), were matched.