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Local assembly and gap closure were performed on paired-end reads located in gaps.
BACs with sequence that does not fit in any scaffold would be predicted to be located in gaps between scaffolds and, indeed, FISH indicates this is the case.
These sequences may presumably be located in gaps in the elephant assembly.
All of these sites are in heterochromatin, and many are located in gaps between scaffolds.
We gathered the paired-end reads with one end mapped to the contigs and another end located in the gaps and performed local assembly with the unmapped end to extend the contig sequence in the small gaps in the scaffolds.
We gathered the paired-end reads with one end mapped to the contigs and another end located in the gaps and performed local assembly with the unmapped end to extend the contig sequence into the small gaps in the scaffolds.
To further shorten the remaining gaps, paired-end reads were gathered with one end mapped on the unique contig and the other located in the gap region to fill small gaps within the scaffolds.
The ions at B-site were located at octahedral gaps.
SNPs located in sequence gaps, repeat regions, or at scaffold ends were discarded.
SNPs located in sequence gaps, repeat regions, or scaffold ends were discarded.
The intercellular couplings are mediated through channels located at gap junctions.
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