Exact(6)
The homologous DNA may be a sister chromatid, a homologous chromosome or an ectopically located sequence.
In this study, we designed and modeled the binding behavior of ten sets of 50-mer probes, each set having six centrally located sequence variants with one, two or three mismatches.
The homologous strand might be a sister chromatid, a homologous chromosome or an ectopically located sequence.
SO is designed to describe biological sequences including located sequence features, for example, polymorphisms, polypeptide domains and predictions.
Screening of FCR and FOAR clones by PCR was undertaken using primer pairs that flanked the desired deletion point and were complementary to chromosomally located sequence that resided external to the homology arms used.
The pseudouridylation guide elements bind to contiguous rRNA sequences, whereas the m1 and m2 elements interact with two distantly located sequence motifs that are folded together by an evolutionarily conserved stem-loop structure of 18S/17S rRNAs (Alkemar and Nygard, 2006).
Similar(54)
All membrane proximal fragments of CHL1ID bound to Hsc70 and CSP, but not to αSGT (Fig. 3B), suggesting that Hsc70 and CSP bind to closely located sequences within the 25 amino acid stretch containing the HPD tripeptide.
Transcriptional repression of telomerically located sequences is well documented in yeast species (22) and is referred to as the telomere position effect (TPE) (23).
In more detail, the algorithm allows the search of genome sequences for closely located sequences which match or nearly match the consensus 5'P4 and 3'P4 regions (taken to be gaaAGuCCCC and acnnnanGGGGCUnannnu respectively, paired bases in uppercase).
PC proposed the idea and, jointly with PBG, wrote the code to locate sequence contigs of sufficient length and compute the α profiles.
For each gene, GRAT was used to locate sequence reads with 95% or higher similarity to two or three annotated versions of the gene sequence, in order to provide complete alignments of the regions.
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