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Any taxon located on a branch immediately adjacent to at least one other taxon with the same subfamily assignment was classed as being a member of that cluster.
The Olympia Oyster Company, a 125-year-old outfit located on a branch of Totten Inlet, grows them behind dikes on tidal flats, as does Mr. Rowley's client Taylor Shellfish, headed by 84-year-old Justin Taylor, a third-generation oysterman, a few miles away.
Interestingly, even for AISs located on a branch that emanates directly from the soma, MAP2 was expressed in their proximal portion, between the soma and the AnkG-labeled AIS, showing that the axon hillock has a somatodendritic identity.
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In the dendogram constructed for this global collection of B. abortus biovar 1 genotypes from Europe, Africa and the Americans, the Indonesian isolates locate on a branch together with three genotypes originally detected in Europe (BfR91), Africa (BfR96) and North America (BCCNV5).
This strain was located on a deep branch in separate clade shared only with the E.coli O157 H7 Sakai strain.
A single strain (unknown B) was located on a long branch on the reference tree between S. agalactiae and the species clusters of the Salivarius group and its taxonomic status is unclear.
The cohesin modules of ScaC and ScaJ from both C. clariflavum and A. cellulolyticus are located on a separate branch of the type I cohesins in the phylogenetic tree.
However, the B. bronchiseptica human isolate D445 locus is located on a long branch separate from all the other strains, implying that the ptx/ptl loci in D445 has an evolutionary history different from other Bordetella species.
Interestingly, the tree is in high agreement with the phylogenetic tree made from orthologous proteins, and again shows that CLEAA is located on a long branch with as many as 13 unique genomic rearrangements.
The YgeW protein encoded by Escherichia coli and its close homologue from Clostridium botulinum are both located on a long branch emerging at the basis of this OTCases tree.
Kodoko virus is located on an ancestral branch, sister to the monophyletic clade that contains all of the LCMV strains.
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