Exact(7)
The accession numbers for NASH liver datasets are GSM435821 to GSM435827, and for normal control datasets: GSM435828, GSM435833 to GSM435835.
For the full E14.5 liver datasets, differentially methylated regions were identified using the R package bsseq [ 30].
We then randomly selected two runs from either the kidney or liver datasets, and permuted the expression levels of their non-house-keeping genes randomly in the same order.
When analyzing the spleen and liver datasets, enrichment of specific gene ontology terms for genes with clusters of small RNAs overlapping their 3' UTRs was determined using the Functional Annotation tool of the DAVID Bioinformatics Resources [ 48, 49].
From the heat-plot it is evident that the Rlf-DMRs showed surprisingly similar patterns of methylation change in the two liver datasets, despite quite different cell type populations.
The 10.5 embryo dataset, the E18.5 liver dataset and the sub-sampled E14.5 liver dataset (sub-sampled to equal the mean library read-counts of the 10.5 embryo and the E18.5 liver datasets) were mapped to the genome and methylation values obtained, as described above.
Similar(53)
We used two data sets, a yeast dataset [31], [32] and a mouse liver dataset [22], to construct the eQTL networks.
We analyzed the eQTL networks constructed from a yeast dataset and a mouse liver dataset and found 65 and 98 modules respectively.
The liver dataset, however, lacks the structural and myofilament protein complement -major components observed in mouse heart and the Drosophila cardiac tube.
The liver dataset was used to create the PC space, and the subjects' coordinates in every dimension of this space were recorded.
Load a 3D liver dataset from DICOM images.
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