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The gene/protein lists were used for inter-disease comparisons and further functional and network investigations.
The filtered gene lists were used for GO, pathways, and gene-gene interaction analyses by using Ingenuity Pathway Analysis IPAA) software package (Redwood City, CA, USA).
No matter what those contact lists were used for, it's safe to say the feds didn't let the area's gang violence out of their sights.
The mass and retention time lists were used for searches against the ChemSpider database, employing the in-house developed database search tool GoBioSpace (http://gmd.mpimp-golm.mpg.de/webservices/wsGoBioSpace.asmx).asmx
Three gene lists were used for the enrichment analyses: all 1475 genes reported in the 23 independent GEP studies, the 124 genes reported in at least two GEP studies (independently of consistence in expression change between studies), and the 54 genes reported in at least two GEP studies with consistent direction in gene expression change between samples with poor and good prognosis.
The data from SF and SC fibrocytes, CD14+ monocytes, immature and mature dendritic cells (DC), osteoclasts, macrophages and fibroblasts were analysed using significance analysis of microarrays (SAM) with a 0.1% false discovery rate, and the resultant gene lists were used for principal component analysis (PCA).
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SAM analysis56 was used to rank genes based on differential expression scores, DAVID27 was used for GO-term analysis, and GSEA with C2, C6, and C7 gene lists was used for GSEA57.
In 1989, the government of Canada appointed the Royal Commission on Electoral Reform and Party Financing, which in 1991 "recommended that provincial lists be used for federal purposes".
Lists are used for structuring the planning task.
These lists are used for the follow-up of the analyses.
The resulting gene-lists were used for BiNGO analysis with a cut-off of P<0.05 (Hypergeometric test, FWER).
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CEO of Professional Science Editing for Scientists @ prosciediting.com