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Lists of the probe sets sorted by both SVD and gene-by-gene statistical testing are given in Table S3.
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A list of the probe sets used for RT-PCRs is shown in Table 3.
The complete list of the probes used and expression analysis has been submitted to Gene Expression Omnibus GEO # GSE21886.
A full list of the probes and features are available for download (Additional file 9).
A list of the probes used is given in Additional file 6.
A complete description and list of the probes used on the arrays is available at http://web.uvic.ca/grasp.
A list of the probes already sequenced/annotated is accessible on the website of Arch Virol (gene list Hulst et al. pdf).
A complete list of the probes considered for analysis including reasons for exclusion can be found in Additional file 1: Table S2.
Additional files 1, 2, 3, 4, 5, 6, 7 and 8 presents a full list of the probes that are present or absent in each strain.
As shown in Table 3 some of the predicted targets (mRNAs) of a miRNA are not in the list of the probes used in the original mRNA expression data set (Table 2).
The test statistic generated by the csSAM algorithm was used to generate a cell-specific ranked list of the probe-sets, which was then submitted to GSEA for Ranked List Analysis.
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