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For Asterisk mailing lists dataset, we applied our T measure to verify whether our T measure can detect the influential actors.
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The Mouse Genome Informatics functional enrichment tool VLAD (http://proto.informatics.jax.org/prototypes/vlad-1.0.3/) was used to look for overrepresentation of Gene Ontology biological processes represented by each gene list dataset relative to the human dataset as a whole.
Bland-Altman analysis was also applied to evaluate the agreement between the mean attenuation values of the above listed datasets [15].
For this experiment, eight list datasets were integrated.
Listed datasets were obtained via GEO or Arrayexpress or generated by either of the authors from the current manuscript and used in this manuscript.
The descriptions of the publications, cell types, and gene list sizes are listed in Dataset S1.
Finally, we analyze the consistence of DEG lists from datasets for different diseases, using the larger dataset for each disease.
The data.gov website now lists 7,800 datasets, including key government property estate and transport information.
The exact numbers of seed heads collected from each plot are listed in Dataset S1.
Occurrence data for the 20 taxa is listed in Dataset S1 in Supporting Information.
Expression ratios and p-values for all genes are listed in Dataset S1.
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