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The listing of genes up-regulated during GLA production by category shows that genes involved primarily in metabolism, transport, and translation were enriched.
The complete listing of genes (including counts) within the MGI GO categories chosen for this study is located in Additional file 9: Table S21.> -wrap-foot> Genrichmentichment analysis (GSEA) of a subset of gene families in the HUGO database.
Additional file 4 shows a listing of genes in nine cancer data sets, while Table 4 shows an aggregate list of the top 100 genes ranked in terms of their association (mutual information) with COL11A1.
Primarily, data are manually curated from the scientific literature for genes selected from the Cancer Gene Census (http://www.sanger.ac.uk/genetics/CGP/Census/), a listing of genes that are known to be mutated in human cancer.
Of the 22 transcripts (corresponding to 17 unique Flybase genes) significantly regulated by injection with saline, beads, and bacteria relative to controls, two categories were significantly overrepresented: organ morphogenesis, p<0.005, and developmental process, p<0.001 (see Additional file 1: Table S7 for a listing of genes in these GO categories).
Among these two lists, 14 overlapping genes were differentially expressed in response to both pollutant mixtures [for a complete listing of genes with significant changes in expression for the two exposure conditions, see Supplemental Material, Table 2 (http://dx.doi.org/10.1289/ehp.1003323)].
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List of genes in the five QTL intervals identified.
BinGO looks at the enrichment of Gene Ontology assignments in a given list of genes.
See Table 1 for the list of genes and corresponding proteins.
List of genes in association bins for grain yield under drought.
To prioritize these lists of genes for each drug and disease, we followed two approaches.
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