Suggestions(1)
Exact(3)
Others that can not reach the threshold set and fall into any assembly should remain as a list of singletons.
Among them, the scaffolds with more than 70% similarity after multiple alignments were grouped into clusters, and others that cannot reach the threshold set and fall into any assembly should remain as a list of singletons.
The 'Unique Transcript' access point allows the list of singletons and tentative consensus sequences to be associated to the enzymes they encode and, as a consequence, to be mapped 'on the fly' on the KEGG-based metabolic pathways.
Similar(56)
However, the list of singleton genes found in R. akari may provide a start to such an approach (see below).
List of singleton proteins in LRR_Only group not shown in Figure 3.
Similarly, Newbler 2.3 and Newbler 2.5 generate separate lists of singletons, repetitive reads, and 'outliers' (problematic reads such as chimaeras).
At the core of BioJava is a symbolic alphabet API which represents sequences as a list of references to singleton symbol objects that are derived from an alphabet.
The lists of 2803 singleton and 1501 duplicate genes were defined according to Ensembl gene family annotation.
A list of the contig and singleton sequences is available as Additional file 1.
Removing P12 from the list of reference strains, one obtains 57 singletons in the PZ of strain B8.
There is no precise overlap between the principal characteristics of policy-making models discussed earlier and the utilisation processes listed above such as would allow them to be presented in neat pairs of singletons.
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