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A complete list of expressed genes with normalized expression values is provided in Additional file 2. To determine genes differentially expressed between control and water deficit conditions four pairwise comparisons of control groups versus the different water deficit treatments (mild deficit, 6 h (1), severe deficit, 6 h (2), mild deficit, 24 h (3), and severe deficit 24 h (4)) were performed.
For instance, gene expression values are ranked to identify the top-most list of expressed genes, based on an arbitrary expression threshold, or a set of gene expression experiments are clustered, each cluster defining a potentially large gene list.
Having identified the list of expressed and repressed genes, the next step was to merge the expression data to the ChIP-chip data.
The complete list of expressed tags in the two thyroid libraries can be downloaded from the GEO website (see Material and methods).
We have first obtained the list of expressed genes in the different studies.
Because we do not assume that the list of expressed isoforms i.e.e
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Sheet 2. List of differentially expressed (≥2-fold) genes in six possible combinations with their expression.
The chemical composition of rocks is usually declared as a list of elements expressed as oxides.
12284_2014_10_MOESM1_ESM.xls Additional file 1: Table S1.: A list of genes expressed in fog-treated plants.
Details about the list of differentially expressed genes and their putative functions.
In Table 4 we present a list of transporters expressed by the CNS vasculature.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com