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(XLS 4963 kb) Additional file 6: Complete list of abundance of the identified unigenes.
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Conditions, reagents, as well as the procedure for data processing in order to obtain a list of abundances of all the lipids of interest are provided in Additional file 1.
The increased quality of meta-assembly was further investigated in the T. biloba transcriptome by tracking the improvement in a candidate list of low abundance transcripts.
It is clear that further understanding of disease mechanisms and development of effective treatments will require more than a list of the abundance of gene products, proteins or cells.
The list of all abundances was used to characterise the variance of the dataset and identify outliers ('Materials and methods').
Because of the caveats associated with the use of uninfected lung tissue as a control, we generated both hierarchical and comparative lists of transcript abundance; the overall transcriptional profiles from both methods were strikingly similar.
Species are listed in order of abundance from top to bottom.
Proteins and peptides are listed in order of abundance expressed as a percentage of the shell total proteome that we can identify.
Retention times and MS data for compounds analyzed are shown in Additional file 1. MS2 ions are listed in order of abundance and relative amounts are shown only if ions were used to discriminate among possible isomers [ 62].
Both the distribution of mRNA abundance in a cell (A) and the gene expression divergence (B) are solely determined from the gene expression profiles (C), where a gene expression profile is a list of the mRNA abundance of each gene fi(t), where i = 1,.., N, at a given t.
The output is a list of each transcripts' abundance in Transcripts Per Million (TPM).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com