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For this experiment, eight list datasets were integrated.
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The Mouse Genome Informatics functional enrichment tool VLAD (http://proto.informatics.jax.org/prototypes/vlad-1.0.3/) was used to look for overrepresentation of Gene Ontology biological processes represented by each gene list dataset relative to the human dataset as a whole.
Bland-Altman analysis was also applied to evaluate the agreement between the mean attenuation values of the above listed datasets [15].
Listed datasets were obtained via GEO or Arrayexpress or generated by either of the authors from the current manuscript and used in this manuscript.
For Asterisk mailing lists dataset, we applied our T measure to verify whether our T measure can detect the influential actors.
The list of datasets includes eight examples (e.g., Hollywood action).
Searching for "Google" brings up yet another extensive list of datasets to dive into, including a listing of the company's 2012 H-1B Visa applications.
The list of datasets used is shown in Table 1.
Supplementary data 5 List of datasets used for cassava.
The complete list of datasets is provided in Table 1.
Supplementary data 4 List of datasets used for Arabidopsis.
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