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The Mouse Genome Informatics functional enrichment tool VLAD (http://proto.informatics.jax.org/prototypes/vlad-1.0.3/) was used to look for overrepresentation of Gene Ontology biological processes represented by each gene list dataset relative to the human dataset as a whole.
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For this experiment, eight list datasets were integrated.
For Asterisk mailing lists dataset, we applied our T measure to verify whether our T measure can detect the influential actors.
Bland-Altman analysis was also applied to evaluate the agreement between the mean attenuation values of the above listed datasets [15].
Listed datasets were obtained via GEO or Arrayexpress or generated by either of the authors from the current manuscript and used in this manuscript.
The datasets which are used to build the map can be selected from the list of datasets labelled as "Select datasets to be used for the graph".
The list of datasets includes eight examples (e.g., Hollywood action).
Searching for "Google" brings up yet another extensive list of datasets to dive into, including a listing of the company's 2012 H-1B Visa applications.
The exact numbers of seed heads collected from each plot are listed in Dataset S1.
Occurrence data for the 20 taxa is listed in Dataset S1 in Supporting Information.
Expression ratios and p-values for all genes are listed in Dataset S1.
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CEO of Professional Science Editing for Scientists @ prosciediting.com