Sentence examples for linkage format from inspiring English sources

Files containing the called genotypes were output to a pre-MAKEPED linkage format file [18].

A linkage format locus data file was generated to form the two required inputs to PEDCHECK v1.1 [19] which detects all Mendelian inconsistencies.

International HapMap Project data markers (http://www.hapmap.org) [23] and DNA sequence variations evaluated in SLC26A5 in this study were uploaded into HaploView 4.0 software for analysis as singletons in Linkage format.

This facilitates exporting data in formats commonly used in downstream analyses (e.g., GAS or LINKAGE format).

Genotypes were read and called with standard Affymetrix software (GCOS, GTYPE, Genotyping Console, BRLMM) using default parameters, and exported as linkage-format files.

Users can input actual genotype data [in either the conventional linkage pedigree format or PLINK binary format (Purcell et al. 2007)] or the HapMap LD data into GEC to quickly calculate Me of the whole genome or at some specified genomic regions.

When exporting data in LINKAGE or RelCheck format, GeneLink systematically recodes genotype labels (1, 2, 3,...) to provide properly-formatted data for analysis by these programs.

First, any user with administrator (admin) privileges can export data by Panel in LINKAGE or GAS formats.

Chromosome-specific LINKAGE, GAS, and RelCheck format files can easily be exported by GeneLink.

Data are easily accessible, and the individual form computerized data format facilitates linkage to other registries.

The resulting genotype output was opened and converted to R/qtl (Broman et al. 2003) format for linkage mapping in Microsoft Excel.