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Since three of these clades (one per Physcomitrium lineage) cluster with the P. patens (ssp.
Of these, 83 tobramycin-resistant isolates obtained from 83 patients belonged to 1 clonal lineage (cluster I, outbreak strain).
Six belonged to the ' italica' lineage cluster, six to euphorbiae, three to ' enigmatica', and one to the tithymali cluster.
Within the B lineage cluster two patients with c-ALL with t(9 22) are linked together as well as two patients with hyperdiploid karyotype.
As expected, all chromosomes belonging to the H1 lineage cluster together in a single branch, regardless of the continental origin, clearly separated from the H2 haplotypes.
The known summer-run populations in the coastal lineage cluster together with significant bootstrap support, rather than clustering with winter-run populations from the same tributaries (i.e., Kalama and Hood rivers).
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In addition to the overall composite picture of lineage clusters of different origin, we observed a number of deep-rooting lineages, whose relative clustering and coalescent ages suggest an autochthonous origin in the southwestern Asian corridor during the Pleistocene.
For example, the WI/1/66 lineage clustered Canadian and United States isolates mainly from turkeys, mallard ducks, and shorebirds, and formed an independent North American cluster (Figure S1A H).
The DE/113/95 lineage represent duck isolates from China, Germany, and Japan from 1995 onwards, while the HK/289/78 lineage clustered 1978 1979 duck isolates from Hong Kong and 1988–1991 mallard isolates from Canada.
In our panorama phylogenetic analysis, the BJ/1/94 lineage clustered most H9N2 isolates from chickens, pigs, and other minor poultry (e.g. partridge, chukkar, Guinea fowl, pheasant, and silky chicken) [25].
For example, the HK/AF157/92 lineage was represented by the single virus A/quail/Hongkong/AF157/92, while the following five lineages were only distributed in single gene segments: in the NA phylogenetic tree, the HK/G9/97 lineage clustered some H9N2 isolates from poultry, wild bird, pig, and human.
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