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In this line, we compared the expression of GFP in live embryos and that of endogenous Prep1.1 by in situ hybridization (ISH) using an antisense prep1.1 probe.
In each cell line, we compared the expressions of 22.000 genes in vitro and in the xenografts, using the Affymetrix microarray approach.
From the ChIP-Seq data for the K562 cell line and the GM12878 cell line, we compared the binding profiles of 11 TFs assayed in both cell lines.
In the very early step of our research study, in hormone-dependent MCF-7 breast cancer cell line, we compared the performance of several DAX-1 antibodies.
For each cell line, we compared the wild type to the group of the three clones; this way, the effects of any non-specific alterations in gene expression within individual clones on the overall comparison would be minimized.
For each W line, we compared expression to the tester line in a parental mix (i.e. an equal mix of homozygous tester and W line flies), the related F1 heterozygote, and a corresponding introgression (see methods for details).
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Although no corresponding control cells were available for these malignant cell lines, we compared their selenoprotein labeling patterns to those of normal NIH3T3 cells.
To investigate if the peak profiles varied between cell lines, we compared the MCF-7 profile to that of BT-474 another breast cancer cell line, as well as, to that obtained with H520, a lung cancer cell line.
Because only a few genes were commonly regulated by MF101 and LIQ in three cell lines, we compared the number of genes commonly regulated by these drugs in two cell lines (Table 4).
In human AML cell lines we compared dose-dependent responses to AZA and DAC on cell viability, protein synthesis, DNMT1 depletion, hypomethylation of DNA, induction of DNA damage, cell cycle, induction of apoptosis, and gene expression.
Given the extensive overlaps between the responses to anti-BCR and anti-CD20 treatments within each of the two cell lines, and yet the small overlaps between both cell lines, we compared the BCR transcription patterns across all four cell lines (Figure 3).
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