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In our study, host species jump by C. abortus may be indicated by C. psittaci 84/2334, which grouped close to all C. abortus strains, showing limited divergence with C. abortus with only 7 fixed nucleotide substitutions and should therefore be classified as C. abortus.
Similarly, M. arosiense, despite having extremely limited divergence with MIP on comparison of its marker genes used in this study, is a pathogenic scotochromogen that grows optimally at 42°C and takes more than 14 days for visible colonies to appear on 7H11 agar, that too with a heavy inoculum [12].
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rps14 sequences were deemed to be of likely mitochondrial provenance if one or both of the following criteria were met: 1) they aligned well with the published mitochondrial rps14 sequences of Oryza and Triticum with limited divergence, and 2) they were determined to undergo mitochondrial-characteristic/diagnostic C→U and/or U→C RNA editing.
In contrast, directional selection yielded tightly clustered evolved morphologies distant from the origin of principal component plots with limited divergence from the selection trend and monotonic rise in divergence from starting morphology over time (Polly 2004:Fig. 7).
Alignment of the putative VP1 amino acid sequences of HEV strains with their respective prototype strains revealed a limited divergence; only 2 substitutions were found in CVA21, and 9 substitutions and 1 deletion was found in EV68 (data not shown).
Additionally, the recent discovery of incomplete dosage compensation in a fish with XY sex determination may be due to limited divergence between the nascent sex chromosomes (Leder et al. 2010).
Their limited divergence suggests a very recent origin for these taxa or mitochondrial exchange during the Pleistocene.
Low complexity is consistent with relatively recent proliferation of a small number of originating TE's resulting in limited divergence of k-mers.
Modest sequence differences within and outside PARCEL domains reveal only limited divergence.
However, more limited divergence may not lead to disruption of performance.
This level of divergence is similar to that observed in the human alpha satellite family (20 40% average divergence, with limited sequence divergence between copies of the HORs within a given array) (Willard and Waye 1987; Alexandrov et al. 1988, 2001).
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