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The model prediction space is sampled directly and the corresponding model parameters are determined by constraint maximum likelihood to check the agreement of the predictions with the data.
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These models were compared using likelihood ratio tests (LRTs) of the log likelihood (InL) to check which model fit the data significantly better.
We plotted the number of generations versus likelihood scores to check stationarity.
Each time, we calculated a log likelihood ratio test to check that the term removed did not have a big effect in the model.
We used the likelihood ratio test to check for model fit by dropping insignificant variables first and refit the model until we got the best fit.
We performed log-likelihood profiles in order to check convergence to the maximum likelihood and to calculate 95% confidence intervals (CI95%) for parameter estimates.
A dummy capturing self-reported likelihood of emigration serves to check whether Latvian citizenship is sought in order to emigrate.
We used a Likelihood Ratio Test (LRT) to check the departure from a multiplicative model (we compared model (d) with model (a)).
To compute p-values (which we call empirical p-values), we applied a permutation scheme to the Wald's statistics of the genotype specific odds ratio parameter, to the Wald test measuring the goodness of fit of the model and to the likelihood ratio tests used to check (a) the departure from a multiplicative model and (b) to perform a conditional independent test (see below).
Hosmer-Lemeshow and -2 log likelihood tests were used to check goodness-of-fit of the final model.
A possible way of assessing the likelihood of contamination is to check the area around the water body for the presence of animals that may act as infection sources.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com