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The parameters of each model are estimated within a Maximum Likelihood framework.
All methods are in a penalized likelihood framework with weighted L1 regularization.
Models were fit in a maximum likelihood framework and ranked according to the Akaike information criterion.
This algorithm is based on the maximum likelihood framework and optimizes the objective function given in Equation 2. (2..
Phylogenetic tree topologies conforming to a variety of specific hypotheses were tested in a likelihood framework.
to reconstruct ancestral character states in a maximum likelihood framework at five selected nodes in the phylogeny.
PAML uses a likelihood framework to estimate a parameterization of Ka/Ks, termed ω, to model sequence evolution.
SNPMStat v 3.0 simultaneously fits a model of association and imputes genotypes by integrating inference of missing genotypes and estimation of odds ratio into a single likelihood framework.
This analysis compares the goodness of fit of phylogenies inferred from alignment fragments under the maximum likelihood framework using the corrected Akaike Information Criterion.
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We used PAML to estimate ω and compare different codon substitution models in a maximum-likelihood framework [22], [33].
Coalescent theory, placed in a maximum-likelihood framework, allows researchers to explicitly test hypotheses concerning the processes that shape patterns of genetic variation in natural populations [1].
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