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SolSNP, an individual sample variant detector (classifier) implemented in Java does the variant calling based on a modified Kolmogorov-Smirnov like statistic, which incorporates base quality scores.
In order to calculate a "bimodality" function for each gene in the 295 patients' set, we introduced a t-test like statistic τ, which is a partition function that describes the relative difference between average of signals between each peak.
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The expression data (peak heights) and two statistics (GOGOTstat and t-like statistic) for all 10,624 TDFs in the HiCEP expression matrix are available in Additional file 1.
dIn the case of a univariate predictee variable X, the Granger statistic is sometimes defined as the R2-like statistic exp FY→X)−1, which has an asymptotic F- rather than a χ2 null distribution (Hamilton1994).
This is quantified by using the Enrichment Score (ES), a weighted Kolmogorov-Smirnov-like statistic that evaluates if the members of the pathway are randomly distributed or found at the extremes (top or bottom) of the list.
It is a t-Test-like statistic.
A common score is a Kolmogorov-Smirnov-like statistic [ 4, 8] calculated over gene measures.
This high score is mainly caused by a low value for the denominator in the t-like statistic.
Using this null distribution to estimate the significance is analogous to a weighted Kolmogorov-Smirnov-like statistic [ 15].
Other one-sided tests included T-like statistic [ 8]; MaxMean statistic [ 9]; standardized weighted sum statistic [ 10]; and OLS statistics [ 6].
The method ranks significant genes and calculates an enrichment score for each gene set based on a weighted Kolmogorov-Smirnov-like statistic.
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