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We organized the data into three hierarchical levels: probe, bin, and segment (Figure 3).
Results were normalized to cyclophilin A (PPIA) mRNA levels (probe Hs0099999904_m1).
Correlations in probe intensity levels ("probe level correlations") between different IFN treatments, and between either mRNA transcription or chromatin immunoprecipitation for STAT1, were visually assessed using scatterplots.
To compare gene expression differences within the brainstem samples, arrays were classified based on their PAX3 expression levels (probe name: A_23_P502706).
To compare gene expression differences within the brainstem samples, RMA normalization was applied to the arrays where they were then classified based on their normalized PAX3 expression levels (probe 231666_at).
There was no statistically significant difference in ER mRNA expression levels (probe set '205225_at') between cases with complete response and those with residual cancer after chemotherapy (unequal variance t test, P = 0.09) among the ER+ tumors.
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The typical altitude levels probed by the infrared wavelengths are discussed by Takagi and Iwagami (2011).
Their sexual chemistry, profound affection, and trust are on full display in this featurette, drawing in the viewer as the couple connects on the deepest of levels, probing each other's darkest fantasies in a safe, loving environment.
To implement this SSMM algorithm, we organized the data into three hierarchical levels: probes, bins, and segments (Figure 3).
To eliminate signals that were close to background levels, probes which showed intensities lower than the median raw intensity of 111 negative control probes on each slide were excluded from analysis.
We refer to the modality of the first presentation of an item as the "encoding modality" (ENC-MOD with levels: ENC-MODAUD, ENC-MODVIS) and the modality of the second (or repeated) presentation of an item as the "probe modality" (PROBE-MOD with levels: PROBE-MODAUD, PROBE-MODVIS).
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com