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There are different levels of rating, for use in offices, homes, and various government facilities.
For correct solutions without hint the relative frequencies of the four levels of rating of suddenness were significantly different (Friedman rank sum test, p<0.0001): the higher the rating of suddenness, the more incidences we observed (Fig. 1A).
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Indeed, few studies to date have examined intraspecific levels of rate heterogeneity.
These models are expected to be able to accommodate high levels of rate heterogeneity, and therefore to perform better.
However, correlated rates may be preferable to a strict clock at intermediate levels of rate variation.
Estimates of natural levels of rate variation ranged from 0.05-3.38 for different partitions.
Strict and relaxed models were used to analyse sequences simulated under different levels of rate variation.
Hence, a secondary aim of this work was to consider its performance across different levels of rate variation.
The strict clock can be superior for trees with shallow roots because of low levels of rate variation between branches.
Why it might have greater influence at higher levels of rate variation will be explored in future work.
Unlike the independent rates analyses, the correlated rates model did not perform well at higher levels of rate heterogeneity (σ = 0.2-2).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com