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The existence of population-specific differences in expression levels of probes was determined by comparing the expression data using a Kruskal-Wallis test.
We tested the expression levels of probes that overlapped with endo-siRNA reads.
This table shows prime analyses at levels of probes and genes for normal models and swap models.
Intra-platform reproducibility was also assessed by examining the expression levels of probes representing the same genes.
This prediction coincides with the systematically lower expression levels of probes in the Magenta module in strain A/J.
Standardization is intended to account for some gross disparities in the expression levels of probes coming from different data sets which cannot be handled by the normalization procedure.
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Expression levels of probe sets were calculated using GCRMA, followed by identification of differentially expressed probe sets using Limma.
The E. coli pBAD/btuE strain and the complemented ΔbtuE mutants showed decreased levels of probe activation relative to non-overproducing strains (Table 2).
Basically, it takes as input a gene expression dataset and compares, in each sample, the expression levels of probe-sets that are reliable indicators for activity of a given miRNA seed "miR-seed", with the expression levels of other probe-sets present on the array, which serve as reference.
Levels of probe intensity suggested that this sample gained one X chromosome.
However, we were unable to directly measure low levels of probe remaining bound to the bead.
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