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Accordingly, Africa had small levels of haplotype sharing with other regions (Fig. 1) and in the networks (Fig. 2) African haplotypes mostly occupied the periphery of the graph.
Plots of pairwise SFP haplotype sharing indicate regions with high levels of haplotype sharing (Additional File 1, Figure S5.1).
Because of low levels of haplotype sharing in the mitochondrial data, we coded well-supported major clades as alleles (clades ' S', ' G', ' N', ' P', and ' C', see results).
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The La Jolla region displays an intermediate level of haplotype sharing with one common haplotype (haplotype IV) shared by five different sites, but clear geographic clustering for three other groups of closely related haplotypes.
There was a significant difference between the RM Y-STR and the Yfiler sets in the level of haplotype sharing between individuals within regional groups, between populations, and within populations (Fig. 2).
This is supported by the analysis of haplotype sharing.
We evaluated the patterns of haplotype sharing using matching scores based both on individual sequences and on haplotypes.
In sharp contrast, the host opportunistic C. rossi show a high level of haplotype sharing among closely related localities in the same region (Figs. 6 and 7).
Therefore, gene flow varying over time was assumed when estimating the level of gene flow due to differential levels of common haplotype sharing among regions west of the CMR and across the CMR.
The Santa Cruz region shows the greatest degree of CYTB haplotype sharing across sites with three common haplotypes that are shared by at least three different sites.
This map provides the genetic makeup of the two parental varieties and their levels of homozygosity and haplotype sharing.
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