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In that respect, it is interesting to note that our acantharean ESTs contained an unusual beta-tubulin strongly resembling the highly diverging type 2 sequences reported in Foraminifera by [ 33], as well as a less diverging isoform weakly grouping with a new foraminiferan beta-tubulin type (here named "type 3") found in R. filosa cDNA library (Additional file 2).
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Because the reference comparison species pairs we examined have different levels of sequence divergence, this threshold varies in absolute value across species (i.e., it is lower for species that are less diverged and higher for species that are more diverged).
These most recent E. falciformis paralogs are likely less diverged simply due to a shorter time allowed for divergence.
Virus from lung was seldom more or less divergent than blood within subjects; lung was significantly more diverged than one blood tissue in two subjects, and significantly less diverged in four subjects, while there was no difference between lung divergence and any blood tissue divergence when divergence values from all subjects were pooled.
As the clonal species tend to be less diverged in their gene sequences, which may reflect a shorter time of divergence, it is reasonable that such an effect would be more pronounced on the clonal compared with the nonclonal species.
It is possible that genes in low recombination regions, especially those on the fourth chromosome, are less diverged within the complex due to introgression subsequent to initial isolation.
Notably, the two Qa.III.b-SNAREs of Yarrowia lipolytica are much less diverged.
Introgressed loci are expected to be less diverged between species compared with adjacent chromosomal regions.
Again, less diverged lineages approximately corresponded to those with more potentially mobilizable copies.
The BLAT alignment method of identifying gene homologues in the four strains limits our analysis to less diverged genes.
Furthermore, the level of divergence paralleled the functional bias, as the categories containing more orthologous genes were less diverged.
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